combinedMultiHMM {chromstaR} | R Documentation

## Combined multivariate HMM object

### Description

The combined multivariate HMM object is output of the function `combineMultivariates` and is a `list()` with various entries. The `class()` attribute of this list was set to "combinedMultiHMM". For a given hmm, the entries can be accessed with the list operators 'hmm[[]]' or 'hmm$'.

### Value

A `list()` with the following entries:

`info` | Experiment table for this object.
`bins` | A `GRanges-class` object containing genomic bin coordinates and human readable combinations for the combined `multiHMM` objects.
`segments` | Same as `bins`, but consecutive bins with the same state are collapsed into segments.
`segments.per.condition` | A `list()` with segments for each condition separately.
`peaks` | A `list()` with `GRanges-class` containing peak coordinates for each ID in `info`.
`frequencies` | Genomic frequencies of combinations.
`mode` | Mode of analysis.

### See Also

`combineMultivariates`, `uniHMM`, `multiHMM`

[Package chromstaR version 1.8.1 Index]