chromstaR-package {chromstaR} | R Documentation

## Combinatorial and differential chromatin state analysis for ChIP-seq data

### Description

This package implements functions for the combinatorial and differential analysis of ChIP-seq data. It was developed for histone modifications with a broad profile but is also suitable for the analysis of transcription factor binding data. A Hidden Markov Model with a mixture of Negative Binomials as emission densities is used to call peaks. Please refer to our manuscript at http://dx.doi.org/10.1101/038612 for a detailed description of the method.

### Details

The main function of this package is `Chromstar`. For a detailed introduction type `browseVignettes("chromstaR")` and read the vignette. Here is an overview of all `plotting` functions.

### Author(s)

Aaron Taudt, Maria Colome-Tatche, Matthias Heinig, Minh Anh Nguyen

[Package chromstaR version 1.8.1 Index]