modelInfo-class {cleanUpdTSeq} | R Documentation

## Class `"modelInfo"`

### Description

An object of class `"modelInfo"` represents the information of sequence to use in the analysis

### Objects from the Class

Objects can be created by calls of the form `new("modelInfo", upstream, downstream, wordSize, alphabe, genome)`.

### Slots

genome

  Name of the genome to use to get sequence. To find out a list of available genomes, please type available.genomes() in R.

upstream

  This is the length of upstream sequence to use in the analysis.

downstream

  This is the length of downstream sequence to use in the analysis.

wordSize

  This is the size of the word to use as a feature for the upstream sequence. wordSize = 6 should always be used.

alphabet

  These are the bases to use, for example DNA bases ACTG.

### Methods

$, $<-

  Get or set the slot of `modelInfo`

[Package cleanUpdTSeq version 1.20.1 Index]