# This package classifies putative polyadenylation sites as true or false/internally oligodT primed

## Documentation for package ‘cleanUpdTSeq’ version 1.20.1

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

cleanUpdTSeq-package | This package classifies putative polyadenylation sites.
$-method | Class '"PASclassifier"'
$-method | Class '"featureVector"'
$-method | Class '"modelInfo"'
$-method | Class '"naiveBayes"'
$<--method | Class '"PASclassifier"'
$<--method | Class '"featureVector"'
$<--method | Class '"modelInfo"'
$<--method | Class '"naiveBayes"'
BED2GRangesSeq | BED2GRangesSeq
buildClassifier | get Naive Bayes Classifier
buildFeatureVector | buildFeatureVector
classifier | An object of class "naiveBayes" generated from data.NaiveBayes
cleanUpdTSeq | This package classifies putative polyadenylation sites.
data.NaiveBayes | Training Data
featureVector | Class '"featureVector"'
featureVector-class | Class '"featureVector"'
getDownstreamSequence | getDownstreamSequence
getUpstreamSequence | Get upstream sequences of the putative pA site
modelInfo | Class '"modelInfo"'
modelInfo-class | Class '"modelInfo"'
naiveBayes | Class '"naiveBayes"'
naiveBayes-class | Class '"naiveBayes"'
PASclassifier | Class '"PASclassifier"'
PASclassifier-class | Class '"PASclassifier"'
predictTestSet | predictTestSet