calcFractionalCopyNumbers,CNVDetectionResult-method {cn.mops} | R Documentation

## Calculation of fractional copy numbers for the CNVs and CNV regions.

### Description

This generic function calculates the fractional copy numbers of a CNV detection method stored in an instance of `CNVDetectionResult-class`. Must be a result of "referencecn.mops".

### Usage

    ## S4 method for signature 'CNVDetectionResult'
    calcFractionalCopyNumbers(object,
      segStat = "mean")

### Arguments

`object` | An instance of "CNVDetectionResult"
`segStat` | Which statistic per segment should be used. Can be either "mean" or "median". (Default="mean").

### Value

`calcFractionalCopyNumbers` returns an instance of "CNVDetectionResult".

### Author(s)

Guenter Klambauer klambauer@bioinf.jku.at

### Examples

    data(cn.mops)
    r <- referencecn.mops(X[,1:2],apply(X,1,median))
    calcFractionalCopyNumbers(r)

[Package cn.mops version 1.28.0 Index]