getArrayABsignal {compartmap} | R Documentation

## Estimate A/B compartments from methylation array data

### Description

`getArrayABsignal` returns estimated A/B compartments from methylation array data.

### Usage

    getArrayABsignal(obj, res = 1e+06, parallel = FALSE, allchrs = FALSE,
      chr = NULL, targets = NULL, ...)

### Arguments

`obj` | Input GenomicRatioSet object
`res` | Compartment resolution (in bp)
`parallel` | Should the inference be done in parallel?
`allchrs` | Whether all autosomes should be used for A/B inference
`chr` | Specific chromosomes to analyze
`targets` | Specify samples to use as shrinkage targets
`...` | Additional arguments

### Details

This function is modified from the minfi::compartments to infer A/B compartments from array data

### Value

A p x n matrix (samples as columns and compartments as rows) of compartments

[Package compartmap version 1.0.3 Index]