# A/B compartment inference from ATAC-seq and methylation array data

## Documentation for package ‘compartmap’ version 1.0.3

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

array.data.chr14 | Example Illumina 450k methylation array data for compartmap
filtered.data.chr14 | Example ATAC-seq data for compartmap
fisherZ | Fisher's Z transformation
getABSignal | Calculate Pearson correlations of smoothed eigenvectors
getArrayABsignal | Estimate A/B compartments from methylation array data
getATACABsignal | Estimate A/B compartments from ATAC-seq data
getBinMatrix | Generate bins for A/B compartment estimation
getCompartments | Estimate A/B compartments
getCorMatrix | Calculate Pearson correlations of a binned matrix
ifisherZ | Fisher's Z transformation
plotAB | Plots A/B compartment estimates on a per chromosome basis