Package: consensusDE
Type: Package
Title: RNA-seq analysis using multiple algorithms
Version: 1.0.6
Author: Ashley J. Waardenberg
Maintainer: Ashley J. Waardenberg <a.waardenberg@gmail.com>
Description: This package allows users to perform DE analysis using multiple 
    algorithms. It seeks consensus from multiple methods. Currently it supports 
    "Voom", "EdgeR" and "DESeq". It uses RUV-seq (optional) to remove batch 
    effects.
License: GPL-3
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.1.0
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
biocViews: Transcriptomics, MultipleComparison, Clustering
Depends: R (>= 3.5), BiocGenerics
Imports: limma, AnnotationDbi, Biobase, edgeR, BiocParallel,
        GenomicAlignments, EDASeq, RColorBrewer, GenomicFeatures,
        SummarizedExperiment, DESeq2 (>= 1.20.0), pcaMethods,
        dendextend, RUVSeq, Rsamtools, S4Vectors, stats,
        TxDb.Dmelanogaster.UCSC.dm3.ensGene, airway, Biostrings
git_url: https://git.bioconductor.org/packages/consensusDE
git_branch: RELEASE_3_8
git_last_commit: 8b922fe
git_last_commit_date: 2019-01-31
Date/Publication: 2019-01-31
NeedsCompilation: no
Packaged: 2019-02-01 05:14:28 UTC; biocbuild
Built: R 3.5.2; ; 2019-02-01 11:53:12 UTC; windows
