makeBoxPlot,ChrTable,LinkageGroupList-method {contiBAIT} | R Documentation

## makeBoxPlot – creates boxplot of contigs included in the analysis vs those excluded

### Description

makeBoxPlot – creates boxplot of contigs included in the analysis vs those excluded

### Usage

    ## S4 method for signature 'ChrTable,LinkageGroupList'
    makeBoxPlot(chrTable, linkage.contigs)

### Arguments

`chrTable` | A GRanges object consisting of contigs and positions. A meta column called 'names' must be present with names in the same format as those from linkage.contigs. Generated by makeChrTable().
`linkage.contigs` | A list of clustered contigs, generated by clusterContigs()

### Value

a box plot of included and excluded contigs

### Examples

    #make an example barplot of data

    data("exampleLGList")
    data("exampleChrTable")
    makeBoxPlot(exampleChrTable, exampleLGList)

[Package contiBAIT version 1.10.1 Index]