constructAffyCNSet {crlmm} | R Documentation

## Construct an object of class CNSet from Affymetrix cel files

### Description

Construct a container for normalized intensities for Affymetrix cel files, referred to as a `CNSet`

### Usage

    constructAffyCNSet(filenames, sns, cdfName, batch, verbose = TRUE, genome)

### Arguments

`filenames` | Vector of cel file names.
`sns` | Sample identifiers. Defaults to `basename(filenames)`.
`cdfName` | Character string indicating annotation package (e.g., "genomewidesnp6Crlmm")
`batch` | Vector of same length as filenames indicating batch.
`verbose` | Logical.
`genome` | Character string indicating UCSC genome build (hg18 or hg19 supported)

### Value

An object of class `CNSet`

### Author(s)

R. Scharpf

[Package crlmm version 1.40.0 Index]