AssayData-methods {crlmm} | R Documentation

## Methods for class "AssayData" in crlmm

### Description

The `batchStatistics` slot in a `CNSet` object is an instance of the `AssayData` slot. In general, the accessors for `AssayData` are called indirectly by the corresponding method for the `CNSet` class and not called directly by the user.

### Methods

Ns

  `signature(object="AssayData")`: Accessor for genotype frequencies

corr

  `signature(object="AssayData")`: Accessor for the correlation of the log-transformed normalized intensities within the diallelic genotype clusters

mads

  `signature(x="AssayData")`: Accessor for the median absolute deviation of the normalized intensities within the diallelic genotype clusters

medians

  `signature(object="AssayData")`: Accessor for the posterior mean of the normalized intensity within the diallelic genotype clusters.

tau2

  `signature(object="AssayData")`: Accessor for the median absolute deviation of the log-transformed intensities within the diallelic genotype clusters

### See Also

`CNSet-class`, `Ns`, `tau2`, `corr`, `mads`, `medians`

[Package crlmm version 1.40.0 Index]