makeSpeciesFasta_Silva {dada2} | R Documentation

## This function creates the dada2 assignSpecies fasta file for Silva from the SILVA_[VERSION]_SSURef_tax_silva.fasta file

### Description

## Silva release v128 dada2:::makeSpeciesFasta_Silva("~/Desktop/Silva/SILVA_128_SSURef_tax_silva.fasta.gz", "~/tax/silva_species_assignment_v128.fa.gz")

### Usage

    makeSpeciesFasta_Silva(fin, fout, compress = TRUE)

### Details

## Silva release v132 dada2:::makeSpeciesFasta_Silva("~/Desktop/Silva/SILVA_132_SSURef_tax_silva.fasta.gz", "~/tax/silva_species_assignment_v132.fa.gz")

Output: 313502 sequences with genus/species binomial annotation output.

[Package dada2 version 1.10.1 Index]