proteome.example {dagLogo} | R Documentation

## the subset proteome of fruit fly

### Description

the subset proteome of fruit fly

### Usage

    data(proteome.example)

### Format

An object of Proteome for fly subset proteome. The format is: A list with one data frame and an character.

`proteome`

  'data.frame': 1406 obs. of 4 variables

`type`

  'character': "UniProt"

The format of proteome is

`ENTREZ_GENE`

  a character vector, records entrez gene id

`SEQUENCE`

  a character vector, peptide sequences

`ID`

  a character vector, Uniprot ID

`LEN`

  a character vector, length of peptides

### Details

used in the examples Annotation data obtained by: library(UniProt.ws) taxId(UniProt.ws) <- 7227 proteome <- prepareProteome(UniProt.ws) proteome@proteome <- proteome@proteome[sample(1:19902, 1406), ]

### Examples

    data(proteome.example)
    head(proteome.example@proteome)
    proteome.example@type

[Package dagLogo version 1.20.0 Index]