ecoli.proteome {dagLogo} | R Documentation

## the subset proteome of Escherichia coli

### Description

the subset proteome of Escherichia coli

### Usage

    data(ecoli.proteome)

### Format

An object of Proteome for Escherichia coli proteome. The format is: A list with one data frame and an character.

`proteome`

  'data.frame': obs. of 4 variables

`type`

  'character': "UniProt"

The format of proteome is

`ENTREZ_GENE`

  a character vector, records entrez gene id

`SEQUENCE`

  a character vector, peptide sequences

`ID`

  a character vector, Uniprot ID

`LEN`

  a character vector, length of peptides

### Details

used in the examples Annotation data obtained by: library(UniProt.ws) taxId(UniProt.ws) <- 562 proteome <- prepareProteome(UniProt.ws, species="Escherichia coli")

### Examples

    data(ecoli.proteome)
    head(ecoli.proteome@proteome)
    ecoli.proteome@type

[Package dagLogo version 1.20.0 Index]