prepareProteome {dagLogo} | R Documentation

## prepare proteome for background building

### Description

prepare proteome from UniProt webserver or a fasta file

### Usage

    prepareProteome(UniProt.ws, fasta, species="unknown")

### Arguments

`UniProt.ws` | an object of UniProt.ws
`fasta` | fasta file name or an object of AAStringSet
`species` | an character to assign the species of the proteome

### Value

an object of Proteome which contain protein sequence information

### Author(s)

Jianhong Ou

### See Also

`formatSequence`, `buildBackgroundModel`

### Examples

        if(interactive()){
            library(UniProt.ws)
            UniProt.ws <- UniProt.ws(taxId=7227)
            proteome <- prepareProteome(UniProt.ws, species="Drosophila melanogaster")
        }

[Package dagLogo version 1.20.0 Index]