97d1cb27e8478d7ae4de59a2de8c86e7 *CITATION
1e2ce46fc98b7885c39ca44b74252d52 *DESCRIPTION
82aad66b16517c9991aa8cae64982337 *INDEX
95a083311106cdd3a55e228a720df04b *Meta/Rd.rds
b21bf6be65effa17d82ce9f1bcc4bdc4 *Meta/data.rds
429724b30f0322e2d56778dd130867d3 *Meta/features.rds
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6f28471b71342ee493b283d3b492e2f9 *Meta/links.rds
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8f98a19877cd2f16b28ee2f767e4a638 *Meta/vignette.rds
e096c80e50b90520bbd9b8ac19805a4c *NAMESPACE
8ada7993428fbe4013f2164a0f29f319 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/deepSNV
2521050a672410fd0e2175e8e966794f *R/deepSNV.rdb
916fb85b7664431a426829a2a63a9c27 *R/deepSNV.rdx
eb93e43e868cf6b00523766e2093961c *TODO
3ccecc236923abcec5bf3979f95058ec *data/HIVmix.RData
e5e59d311d41716d436bda6c12d6b6f8 *data/RCC.RData
44fe941582b98ed2fb74a2ff43bd04dc *data/counts.RData
8f473e99da6aea7893fbf4f0967161a5 *data/phiX.RData
39946182d2a7087db51be00e27bfe68e *data/pi.RData
a198b59b439c25594d85e0f8c8afc300 *data/trueSNVs.RData
b668e30fc1bc1b8c1f60ad1dbaff8772 *doc/deepSNV.R
79ea907278cca8011a87b7954bfc02ce *doc/deepSNV.Rnw
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92e9aece07ac3612437ffc3be5c5823f *doc/shearwater.R
fc4e56aed626edbec5e35a7c0ac725b0 *doc/shearwater.Rnw
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05a586a89e9f687393bba927604f57c0 *doc/shearwaterML.R
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03adcf464008b8e2642cdb62807764d3 *example/deepSNV-example.R
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62e3352bca95588f9d1478ae36f1ed83 *extdata/control.bam
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1adb135cff9805675264cb6798c010c4 *extdata/deepSNV.vcf
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74ceb014e38fe7f5111bc9d501889a5e *extdata/test.bam.bai
2df1a587bda6e4c60cc283dfd468cbaa *help/AnIndex
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897327460987d91ede53c815d8f2d307 *help/deepSNV.rdb
0dd54ff1036eddd374dc14237887139c *help/deepSNV.rdx
169d7edf0728c4f9180cd6133d528291 *help/paths.rds
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39eda8c72806ec50cb2b7a6e1c04920a *html/estimateDirichlet-methods.html
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903a72ea83ead4594ba41c1d9e99a6aa *html/estimateRho.html
1b1bf00f258c322b66342c2bc49961e6 *html/loadAllData.html
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69ebbdc40c1320c07a50837154703063 *html/mcChunk.html
38fa75f245f5f700fb5f19f66f9a7c60 *html/normalize-methods.html
8abb099233feba96e09ea92a43ac616e *html/p.combine.html
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4ac6bdb63ed964a5e7461be0fce36594 *html/qvals2Vcf.html
f380fd5d09ea493338c295735062c8cd *html/repeatMask-methods.html
b893b70fc76916ce697ad40656cffe7b *html/shearwater.html
36202c6efd3ffd465a68570565909964 *html/show-deepSNV-method.html
8881390a5368364d373c9a2e9534235c *html/summary-methods.html
6422d5eb55848aa02dbc7b1938aa4157 *html/test-methods.html
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