annotLODR {erccdashboard} | R Documentation

## Annotate signal-abundance and ratio-abundance plots with LODR

### Description

Annotate signal-abundance and ratio-abundance plots with LODR

### Usage

    annotLODR(exDat)

### Arguments

`exDat` | list, contains input data and stores analysis results

### Examples

    data(SEQC.Example)

    exDat <- initDat(datType="array", isNorm=FALSE,
                     exTable=UHRR.HBRR.arrayDat,
                     filenameRoot="testRun", sample1Name="UHRR",
                     sample2Name="HBRR", erccmix="RatioPair",
                     erccdilution = 1, spikeVol = 50,
                     totalRNAmass = 2.5*10^(3), choseFDR=0.01)

    exDat <- est_r_m(exDat)

    exDat <- dynRangePlot(exDat)

    exDat <- geneExprTest(exDat)

    exDat <- estLODR(exDat, kind="ERCC", prob=0.9)

    exDat <- annotLODR(exDat)

    exDat$Figures$maPlot

[Package erccdashboard version 1.16.1 Index]