summarizeFlow {flowTime} | R Documentation

## Generate summary statistics for a flowSet

### Description

Gates a sample to all yeast, then singlet, then doublets. Also calculates singlet to doublet ratio. Returns a list of data frames, e.g. output$singlets, output$doublets, etc.

### Usage

    summarizeFlow(flowset, channel = "FL1.A", gated = FALSE, ploidy = FALSE,
      moments = FALSE, only = FALSE)

### Arguments

`flowset` | the `flowSet` to be summarized
`channel` | `character` which data channel should be summarized
`gated` | `boolean` is the data already appropriately gated?
`ploidy` | `character` does the flowSet contain haploid or diploid cells?
`moments` | `boolean` split the data into early, middle, and late moments?
`only` | `character` summarize only "singlet", "doublet", or all "yeast" cells, FALSE will return all

### Value

`data frame` containing the specified summary statistics of the specified cell populations for each frame

### Examples

    plate1 <- read.flowSet(path = system.file("extdata", "ss_example",
    package = "flowTime"), alter.names = TRUE)
    summarizeFlow(plate1, channel = "FL1.A", gated = TRUE,
    ploidy = "diploid", moments = FALSE, only = "yeast")

[Package flowTime version 1.6.1 Index]