ct.getPanther {gCrisprTools} | R Documentation

## Extract a Named List of Entrez IDs Annotated to Each Pathway in `PANTHER.db`

### Description

This is a function that invokes the PANTHER.db Bioconductor library to extract a list of pathway mappings to be used in gene set enrichment tests. Specifically, the function returns a named list of pathways, where each element contains Entrez IDs. Users should not generally call this function directly as it is invoked internally by the higher-level `ct.PantherPathwayEnrichment()` function.

### Usage

    ct.getPanther(species = c("human", "mouse"))

### Arguments

`species` | The species of the cells used in the screen. Currently only 'human' or 'mouse' are supported.

### Value

A named list of pathways from `PANTHER.db`.

### Author(s)

Russell Bainer, Steve Lianoglou.

[Package gCrisprTools version 1.10.1 Index]