fortify.flowFrame {ggcyto} | R Documentation

## Convert a flowFrame/flowSet/GatingSet to a ggplot-compatible data.table

### Description

It extracts events matrices and appends the pData to it so that ggplot can use the pData for facetting.

### Usage

    ## S3 method for class 'flowFrame'
    fortify(model, data, ...)

    ## S3 method for class 'flowSet'
    fortify(model, data, ...)

    ## S3 method for class 'ncdfFlowList'
    fortify(model, ...)

    ## S3 method for class 'GatingSetList'
    fortify(model, ...)

    ## S3 method for class 'GatingSet'
    fortify(model, ...)

### Arguments

`model` | flowFrame, flowSet or GatingSet
`data` | not used.
`...` | not used.

### Value

data.table

data.table

data.table

### Examples

    dataDir <- system.file("extdata",package="flowWorkspaceData")
    gs <- load_gs(list.files(dataDir, pattern = "gs_manual",full = TRUE))

    attr(gs, "subset") <- "CD4" #must attach subset information to GatingSet object before foritfying it
    fortify(gs)

    fs <- getData(gs, "CD8")
    fortify(fs)#fs is a flowSet/ncdfFlowSet

    fr <- fs[[1]]
    fortify(fr)#fr is a flowFrame

[Package ggcyto version 1.10.2 Index]