translate_data {hipathia} | R Documentation

## Translation of the rownames IDs of a SummarizedExperiment to Entrez IDs.

### Description

Translates the IDs in the rownames of a SummarizedExperiment to Entrez IDs. For accepted IDs to be transformed see the DOCUMENTATION.

### Usage

    translate_data(data, species, sel_assay = 1, verbose = TRUE)

### Arguments

`data` | Either a SummarizedExperiment object or a matrix of gene expression.
`species` | Species of the samples.
`sel_assay` | Character or integer, indicating the assay to be translated in the SummarizedExperiment. Default is 1.
`verbose` | Boolean, whether to show details about the results of the execution.

### Value

Either a SummarizedExperiment or a matrix (depending on the input type) of gene expression with Entrez IDs as rownames.

### Examples

    data("brca_data")
    trans_data <- translate_data(brca_data, "hsa")

[Package hipathia version 1.4.1 Index]