cmdsFit-class {htSeqTools} | R Documentation

## Class "cmdsFit"

### Description

Classical Multi-Dimensional Scaling Fit. Function `cmds` creates object of this class.

### Objects from the Class

Objects can be created by calls of the form `new("cmdsFit", ...)`.

### Slots

`points`:

  Object of class `"matrix"` with (x,y) coordinates in the approximated space.

`d`:

  Object of class `"matrix"` with original distances between individuals.

`dapprox`:

  Object of class `"matrix"` with distances between individuals in the approximated space.

`R.square`:

  Percentage of variability in `d` explained by `dapprox` (object of class `"numeric"`)

### Methods

There are `show` and `plot` methods defined for this class.

### Author(s)

David Rossell

### See Also

`cmdscale` from package base.

### Examples

    showClass("cmdsFit")

[Package htSeqTools version 1.30.0 Index]