plotindi {iCNV} | R Documentation

## Individual sample plot

### Description

Plot relationship between platforms and features for each individual. Only work for muli-platform inference.

### Usage

    plotindi(ngs_plr, snp_lrr, ngs_baf, snp_baf, ngs_plr.pos, snp_lrr.pos,
      ngs_baf.pos, snp_baf.pos, icnvres, I = numeric(), h = NULL, t = NULL)

### Arguments

`ngs_plr` | A list of NGS intensity data. Each entry is an individual. If no NGS data, no need to specify.
`snp_lrr` | A list of SNP array intensity data. Each entry is an individual. If no SNP array data, no need to specify.
`ngs_baf` | A list of NGS BAF data. Each entry is an individual. If no NGS data, no need to specify.
`snp_baf` | A list of SNP array BAF data. Each entry is an individual. If no SNP array data, no need to specify.
`ngs_plr.pos` | A list of NGS intensity postion data. Each entry is an individual with dimension= (#of bins or exons, 2(start and end position)). If no NGS data, no need to specify.
`snp_lrr.pos` | A list of SNP array intensity postion data. Each entry is an individual with length=#of SNPs. If no SNP array data, no need to specify.
`ngs_baf.pos` | A list of NGS BAF postion data. Each entry is an individual with length=#of BAFs. If no NGS data, no need to specify.
`snp_baf.pos` | A list of SNP array BAF postion data. Each entry is an individual with length=#of BAFs. If no SNP array data, no need to specify.
`icnvres` | CNV inference result. The output from iCNV_detection()
`I` | Indicating the position of the individual to plot. Type integer.
`h` | start position of this plot. Default Start of the whole chromosome
`t` | end position of this plot. Default End of the whole chromosome

### Value

void

### Examples

    plotindi(ngs_plr,snp_lrr,ngs_baf,snp_baf,
     ngs_plr.pos,snp_lrr.pos,ngs_baf.pos,snp_baf.pos,
     icnv_res0,I=1)

[Package iCNV version 1.2.1 Index]