plotHMMscore {iCNV} | R Documentation

## Plot CNV inference score.

### Description

Plot out CNV inference score. Each row is a sample, each column is a SNP or, exon (WES) or bin (WGS). Red color indicate score favor duplication whereas blue favor deletion.

### Usage

    plotHMMscore(icnv_res, h = NULL, t = NULL, title = "score plot",
      output = NULL, col = "")

### Arguments

`icnv_res` | CNV inference result. Result from iCNV_detection() (i.e. iCNV_detection(...))
`h` | start position of this plot. Default Start of the whole chromosome
`t` | end position of this plot. Default End of the whole chromosome
`title` | of this plot. Character value. Type character Default "score plot"
`output` | generated from output_list_function. If it isn't null, only CNVs in output file will be highlighted. Default NULL
`col` | Specify if would like to plot in DGV color scheme ('DGV',red for deletion, blue for duplication and grey for diploid) or default color scheme (blue for deletion, red for duplicatin and and green for diploid) Type character. Default ”

### Value

void

### Examples

    plotHMMscore(icnv_res0,h=21000000, t=22000000, title='my favorite subject')
    plotHMMscore(icnv_res0,h=21000000, t=22000000, title='my favorite subject',col='DGV')

[Package iCNV version 1.2.1 Index]