output_list {iCNV} | R Documentation

## Generate ouput list.

### Description

Generate human readable output from result calculated by iCNV_detection function

### Usage

    output_list(icnv_res, sampleid = NULL, CN = 0, min_size = 0)

### Arguments

`icnv_res` | CNV inference result. Output from iCNV_detection()
`sampleid` | the name of the sample, same order as the input
`CN` | An indicator variable with value 0,1 for whether exact copy number inferred in iCNV_detection. 0 no exact CN, 1 exact CN. Type integer. Default 0.
`min_size` | A integer which indicate the minimum length of the CNV you are interested in. This could remove super short CNVs due to noise. Type integer. Default 0. Recommend 1000.

### Value

output CNV list of each individual

### Examples

    icnv.output <- output_list(icnv_res=icnv_res0,sampleid=sampname_qc, CN=0)

[Package iCNV version 1.2.1 Index]