hg19DBNM {iGC} | R Documentation

## hg19-RefSeq

### Description

The human genome reference used here is RefSeq transcripts in version hg19 from UCSC Genome Browser. The transcripts with NM marker ID, which are protein-codeing, were selected to be our reference database and provided as hg19DBNM.rda.

### Usage

    hg19DBNM

### Format

A data frame with 39997 rows and 7 variables:

Marker.ID

  RefSeq name with its corrsponding gene symbol

Chromosome

  1-22, X and Y

Start

  starting position, in basepair number

Stop

  ending position, in basepair number

Strand

  positive or negative strand, in + or - symbols

Gene.Symbol

  Gene name

Transcript

  RefSeq name

### Details

This reference provides region information, including chromosome number, starting position, ending position, strand and gene symbols, for converting copy number alteration data into human genes.

### Value

data.table

### Source

UCSC Genome Browser: http://hgdownload.cse.ucsc.edu/downloads.html

[Package iGC version 1.12.0 Index]