6d597bda26309bd86d106404e04d05be *DESCRIPTION
b74da0cacb7c372b40db167cac9a225a *INDEX
29a9012941a6bcb26bf0fb4382c5dd75 *LICENSE
e309abd2a06c4bac38e65722964547fe *Meta/Rd.rds
77a30dbd9a48297ae6e6ef2194a95267 *Meta/features.rds
1b849a11d3189af99cafc486d8bd53ea *Meta/hsearch.rds
e2d73d1acca610f553e3357ca7145dfb *Meta/links.rds
c3c603ade93424a3c3509eade8562af6 *Meta/nsInfo.rds
f974855da8d145800d0654cccbaf5edd *Meta/package.rds
0e6345598d9b1129339dea5bcd37f0c7 *Meta/vignette.rds
5c303db1ba126378c205e80617f7eb06 *NAMESPACE
cbc7f6cb31ce547c75224498369a95eb *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/icetea
ad67dd8b408b1b93841576b8f19d1b1c *R/icetea.rdb
8c74f3ebf7ce27f955e3f62aeb4d63ad *R/icetea.rdx
d81ababe1141aeea21b05124813d1e41 *doc/index.html
034e10cf6c41d3c1dae8cc3c27917fa1 *doc/mapcap_analysis.R
e9a45049b7fb37f1e1a3bec42fe17b45 *doc/mapcap_analysis.Rmd
e380784fd3ff4033054d76406e730368 *doc/mapcap_analysis.html
de8b916f9c226200f79c6f55feb85f55 *extdata/bam/embryo1.bam
91e831f3cd3c9f15a9cbc65a5256bdb2 *extdata/bam/embryo1.bam.bai
6f81004281be96947b0a7aec3fd708e9 *extdata/bam/embryo2.bam
d1a7d506ca48f8dfb57fdd27040e8f8f *extdata/bam/embryo2.bam.bai
6f6a1daa30ac3259ea3446b972abcb30 *extdata/bam/embryo3.bam
e9de33af380be5880cfac7aaec779d24 *extdata/bam/embryo3.bam.bai
aec2b788554ef9596a83903bf43de44e *extdata/bam/embryo4.bam
d8936a1cd8f09891df42ecc85f49424a *extdata/bam/embryo4.bam.bai
0c3c740f5e29282a59189275a59021fd *extdata/demult_fastq/embryo1_R1.fastq.gz
bb8a38293ae9c019a76ce993f1acd7ed *extdata/demult_fastq/embryo1_R2.fastq.gz
4b5ba8fca80d6db6eb9a806c1559e828 *extdata/demult_fastq/embryo2_R1.fastq.gz
260725b25ec4e7e437701e2e8f6a6537 *extdata/demult_fastq/embryo2_R2.fastq.gz
d454f40af936e291683c07234337c40b *extdata/demult_fastq/embryo3_R1.fastq.gz
2f4738c18f72cf9bbe1fbe8ac2bf3d2a *extdata/demult_fastq/embryo3_R2.fastq.gz
33836d593cf2d34191e6d9105c28a907 *extdata/demult_fastq/embryo4_R1.fastq.gz
66177ebfbe632de38653de30e626b104 *extdata/demult_fastq/embryo4_R2.fastq.gz
5892afab3371f7e667c4cd3ffa09f4c0 *extdata/filtered_bam/embryo1.filtered.bam
1d08ad34edc7c3dc9969510759247ac8 *extdata/filtered_bam/embryo1.filtered.bam.bai
2cd6075b990efdd8c87fae97df066e06 *extdata/filtered_bam/embryo2.filtered.bam
567e663f982757e1400a5dd3aefd6279 *extdata/filtered_bam/embryo2.filtered.bam.bai
76e22c135d7a09158387e33ca6d1ff9a *extdata/filtered_bam/embryo3.filtered.bam
3648e402b54371182c11737b521615b2 *extdata/filtered_bam/embryo3.filtered.bam.bai
f245afc12a17c7eff49f9d37f803ac72 *extdata/filtered_bam/embryo4.filtered.bam
c417c9d32ffbab6cfb1a11fc6996e409 *extdata/filtered_bam/embryo4.filtered.bam.bai
f9d63ca9f8a24353ec3282ace47b1a41 *extdata/mapcap_test_R1.fastq.gz
c501e7171f176d240536655600de70ed *extdata/mapcap_test_R2.fastq.gz
57e4621cc32dbcd98aac583bcbc152be *extdata/testTSS_grl.rds
2d25320c06c1ce89e17f5eac3b14db60 *extdata/testTSS_merged.bed
9b3bf381677c717b0928b8276930cb81 *help/AnIndex
9c11b2ebb16693158da9092bb6be48a8 *help/aliases.rds
7233e91bc4f793f6516bb6ffc174f04f *help/icetea.rdb
14db0d9b1893c000de80e4d6575e8573 *help/icetea.rdx
16e9cf0266ba01a9b653a4bd6f053edd *help/paths.rds
41814133ac8f9ffe619ebbdeb2cf341c *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
58c823597d5a50db697b279fc32c9da6 *html/ResizeReads.html
22f3fb003d5c97728c02e18761d8c017 *html/activeChrs.html
3018de9867df3b7543357b6c832ee611 *html/annotateTSS.html
ef2221698fc77cce084f5a3f62174182 *html/check_capSet.html
1e4ef19d04b3b9857a882b9de98fb3b1 *html/demultiplexFASTQ.html
7ca3a5c798314ca91d78df5f70a85e4f *html/detectDiffTSS.html
30d1e6a6ef12a17b6fd2c76ac628a9a4 *html/detectTSS.html
750ac1d6d5748491936ee17ad1e45a69 *html/exampleCSobject.html
b495d079cfa2a910f30730956c171c56 *html/exportTSS.html
62ca778c19339aa5be07b655192b2cc0 *html/filterDuplicates.html
dcc9c3e8e02138bb8190688e6d89de34 *html/filterDups.html
4bd73f5d903f5570d9a1645defb288ec *html/fitDiffTSS.html
dd6a309a7fb7b0a3445445e6e7487c51 *html/getBamFlags.html
c9af8c61bda6193f8ba12750b91f810b *html/getChromBins.html
ccbbb72079982848395e3fa01d897b77 *html/getChromWindows.html
b24e43c4020e6d93f35eb6ade01bfa9e *html/getGeneCounts.html
a1aba050b04676b3bc74fee65a2e2140 *html/getMCparams.html
8fc9f30b6f791c3c5e4ca2afa4797f2f *html/getNormFactors.html
9005277d8fd3e53497fab21f0f38b895 *html/get_newfastq.html
ce3cfbb85b1a7c76b387f58b31dba1a0 *html/getranks.html
cbe78ee7ba212f7133142a2c33a2566c *html/mapCaps.html
4b002f6d083b493367713b6d58726708 *html/newCapSet.html
c8f86796309f14972b8d13887915edad *html/numReadsInBed.html
fc00b0f8ad078f9477b99f20227b058c *html/plotPrecision.html
33983516ae4c8ce1eac6456f59792d69 *html/plotReadStats.html
db027b25ce1d0c3011a9c5e9140e269f *html/plotTSSprecision.html
f2d2f41341b1f1b09491b328511dc716 *html/sampleInfo.html
47e101796e467a96147d275bcbe3e9c0 *html/splitBAM_byIndex.html
7ef638449376021511d3af9e8f2b0ec7 *html/splitBAM_byRepindex.html
e6deefd157422bf6c83c7d317bc72ec9 *html/split_fastq.html
8444fba1154b7313c158d7e5d3e1361c *html/splitranks.html
2ef9a86666de855eff410b4b3c6ae12b *html/strandBinCounts.html
