ldblock-package {ldblock} | R Documentation

## data structures for linkage disequilibrium measures in populations

### Description

Define data structures for linkage disequilibrium measures in populations.

### Details

The DESCRIPTION file:

Package: | ldblock
Title: | data structures for linkage disequilibrium measures in populations
Version: | 1.12.1
Author: | VJ Carey <stvjc@channing.harvard.edu>
Description: | Define data structures for linkage disequilibrium measures in populations.
Suggests: | RUnit, BiocGenerics, knitr
Imports: | Matrix, snpStats, erma, VariantAnnotation, GenomeInfoDb, Rsamtools, GO.db, GenomicFiles (>= 1.13.6), BiocGenerics (>= 0.25.1)
Depends: | R (>= 3.1), methods, Homo.sapiens
Maintainer: | VJ Carey <stvjc@channing.harvard.edu>
License: | Artistic-2.0
LazyLoad: | yes
BiocViews: | genetics, SNP, GWAS, LinkageDisequilibrium
VignetteBuilder: | knitr
git_url: | https://git.bioconductor.org/packages/ldblock
git_branch: | RELEASE_3_8
git_last_commit: | 0d7c6a0
git_last_commit_date: | 2019-04-03
Date/Publication: | 2019-04-03

Index of help topics:

    downloadPopByChr        download hapmap resource with LD estimates
    expandSnpSet            Given a set of SNP identifiers, use LD to
                            expand the set to include linked loci
    hmld                    import hapmap LD data and create a structure
                            for its management
    ldByGene                obtain LD statistics in region specified by a
                            gene model
    ldblock-package         data structures for linkage disequilibrium
                            measures in populations
    ldstruct-class          Class '"ldstruct"'
    s3_1kg                  Create a URL referencing 1000 genomes content
                            in AWS S3

### Author(s)

VJ Carey <stvjc@channing.harvard.edu>

Maintainer: VJ Carey <stvjc@channing.harvard.edu>

### Examples

    # see vignette

[Package ldblock version 1.12.1 Index]