GISTIC-class {maftools} | R Documentation

## Class GISTIC

### Description

S4 class for storing summarized MAF.

### Slots

`data`

  data.table of summarized GISTIC file.

`cnv.summary`

  table containing alterations per sample

`cytoband.summary`

  table containing alterations per cytoband

`gene.summary`

  table containing alterations per gene

`cnMatrix`

  character matrix of dimension n*m where n is number of genes and m is number of samples

`numericMatrix`

  numeric matrix of dimension n*m where n is number of genes and m is number of samples

`gis.scores`

  gistic.scores

`summary`

  table with basic GISTIC summary stats

`classCode`

  mapping between numeric values in numericMatrix and copy number events.

### See Also

`getGeneSummary` `getSampleSummary` `getCytobandSummary`

[Package maftools version 1.8.0 Index]