write.GisticSummary {maftools} | R Documentation

## Writes GISTIC summaries to output tab-delimited text files.

### Description

Writes GISTIC summaries to output tab-delimited text files.

### Usage

    write.GisticSummary(gistic, basename = NULL)

### Arguments

`gistic` | an object of class `GISTIC` generated by `readGistic`
`basename` | basename for output file to be written.

### Value

None. Writes output as tab delimited text files.

### See Also

`readGistic`

### Examples

    all.lesions <- system.file("extdata", "all_lesions.conf_99.txt", package = "maftools")
    amp.genes <- system.file("extdata", "amp_genes.conf_99.txt", package = "maftools")
    del.genes <- system.file("extdata", "del_genes.conf_99.txt", package = "maftools")
    scores.gistic <- system.file("extdata", "scores.gistic", package = "maftools")
    laml.gistic = readGistic(gisticAllLesionsFile = all.lesions, gisticAmpGenesFile = amp.genes, gisticDelGenesFile = del.genes, gisticScoresFile = scores.gistic)
    write.GisticSummary(gistic = laml.gistic, basename = 'laml')

[Package maftools version 1.8.0 Index]