Package: maftools
Type: Package
Title: Summarize, Analyze and Visualize MAF Files
Version: 1.8.0
Date: 2015-12-14
Author: Anand Mayakonda <anand_mt@hotmail.com>
Maintainer: Anand Mayakonda <anand_mt@hotmail.com>
Description: Analyze and visualize Mutation Annotation Format (MAF) files from large scale sequencing studies. This package provides various functions to perform most commonly used analyses in cancer genomics and to create feature rich customizable visualzations with minimal effort.
URL: https://github.com/PoisonAlien/maftools
BugReports: https://github.com/PoisonAlien/maftools/issues
License: MIT + file LICENSE
LazyData: TRUE
Depends: R (>= 3.3)
Imports: data.table, ggplot2(>= 2.0), cowplot, cometExactTest,
        RColorBrewer, NMF, ggrepel, methods, ComplexHeatmap, mclust,
        Biostrings, rjson, grid, wordcloud, grDevices, gridExtra,
        survival, BSgenome
RoxygenNote: 6.1.0
Encoding: UTF-8
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
biocViews: DataRepresentation, DNASeq, Visualization, DriverMutation,
        VariantAnnotation, FeatureExtraction, Classification,
        SomaticMutation, Sequencing, FunctionalGenomics, Survival
NeedsCompilation: no
Packaged: 2018-10-31 03:11:25 UTC; biocbuild
git_url: https://git.bioconductor.org/packages/maftools
git_branch: RELEASE_3_8
git_last_commit: 4078933
git_last_commit_date: 2018-10-30
Date/Publication: 2018-10-30
Built: R 3.5.1; ; 2018-10-31 11:27:29 UTC; windows
