metavizControl {metavizr} | R Documentation

## metavizr settings

### Description

Default settings for the various plotting functions in metavizr.

### Usage

    metavizControl(aggregateAtDepth = 3, aggregateFun = function(x)
      colSums(x), valuesAnnotationFuns = NULL, maxDepth = 4,
      maxHistory = 3, maxValue = NULL, minValue = NULL, title = "",
      n = 10000, rankFun = stats::sd, norm = TRUE, log = FALSE,
      featureSelection = NULL)

### Arguments

`aggregateAtDepth` | Level of the tree to aggregate counts at by default.
`aggregateFun` | Function to aggregate counts by at the aggregateAtDepth level.
`valuesAnnotationFuns` | Function for error bars.
`maxDepth` | Level of the tree to display by default in icicle view.
`maxHistory` | Value for caching.
`maxValue` | Maximum value to display.
`minValue` | Minimum value to display.
`title` | title.
`n` | Number of OTUs to include in ranking.
`rankFun` | Ranking function - single vector function.
`norm` | Normalize MRexperiment object.
`log` | Log tranformation of MRexperiment object.
`featureSelection` | List of features to set as nodeSelections

### Value

List of setting parameters.

### Examples

    settings = metavizControl()

[Package metavizr version 1.6.2 Index]