plotConvergenceGraph {methylInheritance} | R Documentation

## Generate a graph showing the convergence for a permutation analysis

### Description

Generate a graph showing the convergence for a permutation analysis using observed and permuted results.

### Usage

    plotConvergenceGraph(dataFrameConvergence)

### Arguments

`dataFrameConvergence` | a `data.frame` containing the significant levels at different number of cycles (total number of permuted data analysed). The `data.frame` must have 6 columns : "NBR_PERMUTATIONS", "ELEMENT". "ANALYSIS", "POSITION", "TYPE" and "SIGNIFICANT_LEVEL". The "ELEMENT" can be either "SITES" or "TILES". The "TYPE" can be either "HYPER" or "HYPO".

### Value

a `ggplot` object.

### Author(s)

Astrid Deschenes, Pascal Belleau

### Examples

    ## Get the name of the directory where files are stored
    filesDir <- system.file("extdata", "TEST", package="methylInheritance")

    ## Extract convergenc information for F1 and F2 and F3
    data <- loadConvergenceData(analysisResultsDir = filesDir,
        permutationResultsDir = filesDir, type = "sites", inter = "iAll",
        position = 1, by = 1)

    ## Create convergence graph
    plotConvergenceGraph(data)

[Package methylInheritance version 1.6.1 Index]