calculatecount {methylMnM} | R Documentation

## Call C programs to R.

### Description

Call C programs to R for calculate MeDIP-seq or CpG count of each bin.

### Usage

    calculatecount(data2, data3, cpg2, cpg3, datalength, cpglength,
    count=rep(0,cpglength))

### Arguments

`data2` | Start position of each tag.
`data3` | End position of each tag.
`cpg2` | Start position of each bin.
`cpg3` | End position of each bin.
`datalength` | The number of tags
`cpglength` | The number of bins
`count` | Read count of each bin.

### Value

Read count of each bin.

### Author(s)

Yan Zhou, Bo Zhang, Nan Lin, BaoXue Zhang and Ting Wang

### Examples

      data<-matrix( 1:800, nrow=400 )
      data[,2]<-data[,1]+37
      cpg<-matrix( 1:20, nrow=10)
      cpg[,1]<-seq(0,360,length=10)
      cpg[,2]<-seq(40,400,length=10)
      f <- calculatecount(data[,1], data[,2], cpg[,1], cpg[,2], length(data[,1]),
     length(cpg[,2]), count=rep(0,length(cpg[,2])))

[Package methylMnM version 1.20.0 Index]