oligo-defunct {oligo} | R Documentation

## Defunct Functions in Package 'oligo'

### Description

The functions or variables listed here are no longer part of 'oligo'

### Usage

    fitPLM(...)
    coefs(...)
    resids(...)

### Arguments

`...` | Arguments.

### Details

`fitPLM` was replaced by `fitProbeLevelModel`, allowing faster execution and providing more specific models. `fitPLM` was based in the code written by Ben Bolstad in the `affyPLM` package. However, all the model-fitting functions are now in the package `preprocessCore`, on which `fitProbeLevelModel` depends.

`coefs` and `resids`, like `fitPLM`, were inherited from the `affyPLM` package. They were replaced respectively by `coef` and `residuals`, because this is how these statistics are called everywhere else in `R`.

[Package oligo version 1.46.0 Index]