toLevel3 {paxtoolsr} | R Documentation

## Convert a PSIMI or older BioPAX OWL file to BioPAX Level 3

### Description

This file will convert PSIMI or older BioPAX objects to BioPAX Level 3

### Usage

    toLevel3(inputFile, outputFile = NULL)

### Arguments

`inputFile` | a string of the name of the input file
`outputFile` | a string of the name of the output BioPAX OWL file

### Value

an XMLInternalDocument representing a BioPAX OWL file

### Examples

    inputFile <- system.file("extdata", "raf_map_kinase_cascade_reactome.owl",
      package="paxtoolsr")
    outFile <- tempfile()
    results <- toLevel3(inputFile, outFile)

[Package paxtoolsr version 1.16.0 Index]