sample_data {phyloseq} | R Documentation

## Build or access sample_data.

### Description

This is the suggested method for both constructing and accessing a table of sample-level variables (`sample_data-class`), which in the `phyloseq-package` is represented as a special extension of the `data.frame-class`. When the argument is a `data.frame`, `sample_data` will create a sample_data-class object. In this case, the rows should be named to match the `sample_names` of the other objects to which it will ultimately be paired. Alternatively, if the first argument is an experiment-level (`phyloseq-class`) object, then the corresponding `sample_data` is returned. Like other accessors (see See Also, below), the default behavior of this method is to stop with an error if `object` is a `phyloseq-class` but does not contain a `sample_data`.

### Usage

    sample_data(object, errorIfNULL=TRUE)

    ## S4 method for signature 'ANY'
    sample_data(object, errorIfNULL = TRUE)

    ## S4 method for signature 'data.frame'
    sample_data(object)

### Arguments

`object` | (Required). A `data.frame-class`, or a `phyloseq-class` object.
`errorIfNULL` | (Optional). Logical. Should the accessor stop with an error if the slot is empty (`NULL`)? Default `TRUE`.

### Value

A `sample_data-class` object representing the sample variates of an experiment.

### See Also

`phy_tree`, `tax_table`, `otu_table` `phyloseq`, `merge_phyloseq`

### Examples

    #
    data(soilrep)
    head(sample_data(soilrep))

[Package phyloseq version 1.26.1 Index]