Package: pqsfinder
Type: Package
Title: Identification of potential quadruplex forming sequences
Version: 1.10.1
Date: 2017-04-12
Authors@R: c(person("Jiri", "Hon", role = c("aut", "cre"), email =
        "jiri.hon@gmail.com"), person("Tomas", "Martinek", role =
        "aut", email = "martinto@fit.vutbr.cz"), person("Matej",
        "Lexa", role = "aut", email = "lexa@fi.muni.cz"))
Author: Jiri Hon, Matej Lexa and Tomas Martinek
Maintainer: Jiri Hon <jiri.hon@gmail.com>
Description: The main functionality of this package is to detect
        DNA sequence patterns that are likely to fold into an
        intramolecular G-quadruplex (G4). Unlike many other approaches,
        this package is able to detect sequences responsible for G4s
        folded from imperfect G-runs containing bulges or mismatches
        and as such is more sensitive than competing algorithms.
License: BSD_2_clause + file LICENSE
biocViews: MotifDiscovery, SequenceMatching, GeneRegulation
LazyData: TRUE
Depends: Biostrings
Imports: Rcpp (>= 0.12.3), GenomicRanges, IRanges, S4Vectors, methods
Suggests: BiocStyle, knitr, Gviz, rtracklayer, ggplot2,
        BSgenome.Hsapiens.UCSC.hg38, testthat, stringr
LinkingTo: Rcpp, BH (>= 1.66.0)
SystemRequirements: GNU make, C++11
VignetteBuilder: knitr
RoxygenNote: 6.1.0
NeedsCompilation: yes
git_url: https://git.bioconductor.org/packages/pqsfinder
git_branch: RELEASE_3_8
git_last_commit: 84e32c7
git_last_commit_date: 2019-04-04
Date/Publication: 2019-04-04
Packaged: 2019-04-05 03:02:05 UTC; biocbuild
Built: R 3.5.3; i386-w64-mingw32; 2019-04-05 11:21:02 UTC; windows
Archs: i386, x64
