parseMatsEvent {psichomics} | R Documentation

## Parse alternative splicing events from MATS

### Description

Parse alternative splicing events from MATS

### Usage

    parseMatsEvent(event, event_type)

### Arguments

`event` | Data frame row: MATS splicing event
`event_type` | Character: Type of event to parse (see details)

### Details

The following event types can be parsed:

- SE: Skipped exon

- MXE: Mutually exclusive exons

- RI:Retained intron

- A3SS: Alternative 3' splice site

- A5SS: Alternative 5' splice site

### Value

List containing the event attributes and junctions

### Examples

    # MATS event (alternative 3' splice site)
    event <- read.table(text = "
         2 ENSG00000166012 TAF1D chr11 - 93466515 93466671 93466515 93466563 93467790 93467826
         5 ENSG00000166012 TAF1D chr11 - 93466515 93466671 93466515 93466585 93467790 93467826
         6 ENSG00000166012 TAF1D chr11 - 93466515 93466585 93466515 93466563 93467790 93467826
    ")
    psichomics:::parseMatsEvent(event, "A3SS")

[Package psichomics version 1.8.2 Index]