getValuePerPatient {psichomics} | R Documentation

## Assign average sample values to their corresponding patients

### Description

Assign average sample values to their corresponding patients

### Usage

    getValuePerPatient(data, match, clinical = NULL, patients = NULL,
      samples = NULL)

    getValuePerSubject(data, match, clinical = NULL, patients = NULL,
      samples = NULL)

    assignValuePerPatient(data, match, clinical = NULL, patients = NULL,
      samples = NULL)

    assignValuePerSubject(data, match, clinical = NULL, patients = NULL,
      samples = NULL)

    getPSIperPatient(psi, match, clinical = NULL, patients = NULL, ...)

### Arguments

`data` | One-row data frame/matrix or vector: values per sample for a single gene
`match` | Matrix: match between samples and patients
`clinical` | Data frame or matrix: clinical dataset (only required if the `patients` argument is not handed)
`patients` | Character: patient identifiers (only required if the `clinical` argument is not handed)
`samples` | Character: samples to use when assigning values per patient (if `NULL`, all samples will be used)
`psi` | Data frame or matrix: values per sample
`...` | Deprecated arguments

### Value

Values per patient

### Examples

    # Calculate PSI for skipped exon (SE) and mutually exclusive (MXE) events
    annot <- readFile("ex_splicing_annotation.RDS")
    junctionQuant <- readFile("ex_junctionQuant.RDS")

    psi <- quantifySplicing(annot, junctionQuant, eventType=c("SE", "MXE"))

    # Match between subjects and samples
    match <- rep(paste("Patient", 1:3), 2)
    names(match) <- colnames(psi)

    assignValuePerSubject(psi[3, ], match)

[Package psichomics version 1.8.2 Index]