getConsensusSTRINGIDs {pwOmics} | R Documentation

## Get consensus graph in STRING IDs.

### Description

Get consensus graph in STRING IDs.

### Usage

    getConsensusSTRINGIDs(data_omics, tps, string_db, updown = FALSE,
      phospho = TRUE)

### Arguments

`data_omics` | OmicsData object.
`tps` | integer specifying current timepoint under consideration.
`string_db` | STRING_db object.
`updown` | boolean value; TRUE in case up- and downregulation should be checked individually for intersection. Type of checking is defined with parameter 'phospho'.
`phospho` | boolean value; TRUE in case up- and downregulation should be checked based on provided downstream phosphoprotein influence from identifyPR function; FALSE in case up- and downregulation should be checked for without phosphoprotein database knowledge. Default is TRUE.

### Value

igraph object consensus graph with STRING IDs (only including proteins and transcription factors).

[Package pwOmics version 1.14.0 Index]