getBatchReadCountPerWindow {r3Cseq} | R Documentation

## count reads per window size for replicates analysis

### Description

Counts the number of reads from 3C-Seq data per each window size for replicates analysis

### Usage

    getBatchReadCountPerWindow(object,windowSize=5e3,nFragmentExcludedReadsNearViewpoint=2,mode=c("non-overlapping", "overlapping"))

### Arguments

`object` | r3CseqInBatch object
`windowSize` | Numeric. non-overlapping window size for counting reads (default=5e3)
`nFragmentExcludedReadsNearViewpoint` | Numeric. The number of excluded fragments around the viewpoint, reads found in these fragments will be removed from the analysis (default=2)
`mode` | character. The window-based modes analysis (default="non-overlapping")

### Value

The RangedData represents the number of reads per each window size

### Author(s)

S. Thongjuea

### See Also

getReadCountPerRestrictionFragment, getBatchReadCountPerRestrictionFragment, getReadCountPerWindow,

### Examples

      #See the vignette

[Package r3Cseq version 1.28.0 Index]