annotateModule {rTRM} | R Documentation

## Annotate a network module with information

### Description

Uses information about expression, enrichment and parent PPI network to annotate a subgraph.

### Usage

    annotateModule(g, enrich, trm, targets, ppi, exprs, tfs)

### Arguments

`g` | graph to annotate in igraph format.
`enrich` | list of enriched transcription factors (or motifs).
`trm` | TRM to compare with (to identify bridges).
`targets` | list of target transcription factors (typically those with ChIP-seq data).
`ppi` | parent PPI network (to check membership of nodes).
`exprs` | list of entrezgene ids representing expressed genes.
`tfs` |

### Author(s)

Diego Diez

[Package rTRM version 1.20.0 Index]