ae075240be742c0969aad9c94e6a5e31 *CITATION
fc29543a3d64b7056870c2068e80eb1b *DESCRIPTION
83e32a02102bd5db99b1abe76e72e452 *INDEX
597211c750e95730cfeff7ab27ce352f *Meta/Rd.rds
d738ec423b64a3d3fe753ab658d3a1a0 *Meta/data.rds
429724b30f0322e2d56778dd130867d3 *Meta/features.rds
e5479b33447ca7b47bf18716132d70e7 *Meta/hsearch.rds
79b54829cb4119b5d91b22cf3368556c *Meta/links.rds
a3602f990a11e717d9e285ed5e3e6cf9 *Meta/nsInfo.rds
44fefe31d8a7f41c2430ad3e47f07c70 *Meta/package.rds
8644d314eff972cb74846a104514b982 *Meta/vignette.rds
e252bd722268a57cd6ebc4065b35b52b *NAMESPACE
88799e12a0bcb0bfc36b476bcb5951ad *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/rTRM
35d41756e39db333a1a76ef5b90b25bc *R/rTRM.rdb
af4a23fb6b74281644f2839af233bab2 *R/rTRM.rdx
39cf1ac4f3cf9c8cc4705db309db9578 *data/biogrid_hs.rda
ad0a8c78b1877871d539d9de7f700ea3 *data/biogrid_mm.rda
f246fde7976b255f72367afee71bf9d9 *data/datalist
2bd1f5b9fc49bd5ba9911be8dd79973a *db/database.db
3c90d8c315cde66b14a4f346f33a7a85 *doc/index.html
c8315ed8a0930da62df1f875d02c3118 *doc/rTRM_Introduction.R
10e871217ea32f1b3b025655c7337042 *doc/rTRM_Introduction.Rnw
c8ba9534977ae5781290d58af3b1c7e0 *doc/rTRM_Introduction.pdf
98b9ba03259ae6d5fc4516e7a658a10a *extra/ESC-expressed.txt
f658dbb8940b92bfdafc3dcf2cdb698f *extra/ESC_Sox2_peaks.txt
fbb496fd5991c64b1437c46008ae2c4a *extra/example.rda
ef10b0ee264bece1a4bc5de1d57d5102 *extra/pwm_mm_logn.rda
437a3b466c73481572d3acda987eacef *extra/sox2_enr.rda
8bf034224b0f19bbbb6cb98c90e979af *extra/sox2_motif_list.rda
380492bb98fe9ecd48241bc9ab42771c *extra/test.R
4fd5f8a7026274a26f8077d8a56011be *help/AnIndex
7b5aeb5d7fffa65a2f1866ab150654d0 *help/aliases.rds
b308946d1194a25293150d92acbd7f43 *help/paths.rds
74a9844d566dbe4eeaa7da520237cfea *help/rTRM.rdb
fde621df115be86a48015d2b82fecf89 *help/rTRM.rdx
507b3590f5e1c58f4e50093c0e6b54c3 *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
37083d8d41e9863b02e23d0c4e89416d *html/annotateFreq.html
e46f51db95bb7fc121b8e17e827b4d60 *html/annotateModule.html
bfdad9d81ea6d54e0f225811c095a097 *html/annotateTRM.html
6e3950207bf429441cf97ee0c8f7724e *html/biogrid_hs.html
488f8312e931f84e2e338b736b2798dd *html/biogrid_mm.html
c89b3ce59f4ffdd7b32502f896f32c36 *html/findTRM.html
ea804a04f3c1363c1ea9b0a9662e0491 *html/getAnnotations.html
f20e62d88146d68f3dc39d36a43e2c61 *html/getBiogridData.html
f306304f5f10554961d50e42c994c409 *html/getConcentricList.html
823188c1890b85b323d0275fcd050a73 *html/getLargestComp.html
e829b21ba59279d26f9157d456ac1210 *html/getMaps.html
f35b013f137a7d145d733cdfd7f478fe *html/getMatrices.html
4cd45913ab31fcb97d0f84e290769a25 *html/getMotifsFromEntrezgene.html
affe7d3bc71fa253d7486bfec2e0f1f5 *html/getMotifsFromSymbol.html
8a0fa8f3184d1002651b41f94489a487 *html/getOrthologFromMatrix.html
fe09df040b6543396193a6621eaf2eca *html/getOrthologs.html
ebffed6179a5d4f1633bbf02f834472d *html/getOrthologsFromBiomart.html
4a33f50336e8f1517881d6f5c08e5ebd *html/getSequencesFromGenome.html
b587b576edd4d1ad2dcd5a0fe7d7086f *html/getSimilarityMatrix.html
80a2d08af62972383b17e4012767624b *html/getTFclass.html
5ec8b13f7a1091af369a52367ebbe9ed *html/getTFclassFromEntrezgene.html
c9a7f94bf410f8d0cab007ce178c94c9 *html/getTFterms.html
d218773cd429bba3f380228512f747ba *html/initBiomart.html
2a6736289245a1557c484f59a0c75186 *html/layout.arc.html
1a0264e0d3dee097c1acfced46b9eb53 *html/layout.concentric.html
9fa67b13219e4bd95d162537608598e7 *html/plotDegree.html
fdfa837523d6ba3c4b84e689a7a894ef *html/plotGraph.html
c13cf2aa50d4289614d523ab89a01f8f *html/plotTRM.html
62b0a2f043b70c6296f401edb1bd0b11 *html/plotTRMlegend.html
a4e1d8e760c2b4be8218d125c89506c0 *html/processBiogrid.html
4102446cd2fee760a35d145a2dd53585 *html/rTRM-package.html
807f313bf82241dbb50c8e918edd3b9b *html/removeVertices.html
ae016353384ae45c1653eba6f83d6383 *html/writeTRMreport.html
f41c2ce67d4c05dd947ee755befef8e9 *unitTests/test_findTRM.R
