getGoMolecularFunctions {readat} | R Documentation

## GO definitions by AptamerId

### Description

Gets the GO definitions associated with SomaLogic Sequence IDs. There are three datasets, one for each of these domains: molecular function, biological process, and cellular compartment.

### Usage

    getGoMolecularFunctions(aptamerIds = NULL, simplify = FALSE)

    getGoBiologicalProcesses(aptamerIds = NULL, simplify = FALSE)

    getGoCellularComponents(aptamerIds = NULL, simplify = FALSE)

### Arguments

`aptamerIds` | A character vector of SomaLogic Sequence IDs, or `NULL` to use all 1129 Sequence IDs.
`simplify` | Logical. Should the output be collapsed into a single data.frame?

### Value

A list of data frames. The names of the list are the input aptamerIds, and the data frame associated with that element contains:

UniProtId

  Character. UniProt ID for the protein target.

GoId

  Character. GO ID for property of the target protein.

GoName

  Character. Name corresponding to the GO ID.

GoDefinition

  Character. Description corresponding to the GO ID.

### Examples

    # Each AptamerId may have one, many, or zero associated GO descriptions
    getGoMolecularFunctions(c("2278-61", "3505-6", "4916-2"))
    getGoBiologicalProcesses(c("2278-61", "3505-6", "4916-2"))
    getGoCellularComponents(c("2278-61", "3505-6", "4916-2"))

    # Get everything in the 1310 and 1129 panels.
    ## Not run:
    getGoMolecularFunctions()
    getGoBiologicalProcesses()
    getGoCellularComponents()

    ## End(Not run)

[Package readat version 1.8.0 Index]