fromW4M {ropls} | R Documentation

## fromW4M

### Description

Creating a ExpressionSet object from the 3 'dataMatrix.tsv', 'sampleMetadata.tsv' and 'variableMetadata.tsv' tabulated files

### Usage

    fromW4M(dirC, namePatternC = "", fileTableNamesVc = c("dataMatrix",
      "sampleMetadata", "variableMetadata"), verboseL = TRUE)

### Arguments

`dirC` | Character: directory containing the 3 .tsv files
`namePatternC` | Character: optional file name pattern common to all three file names (e.g., when you want to distinguish between two sets of files within the same directory)
`fileTableNamesVc` | Vector of characters: if your file names do not contain the standard 'dataMatrix', 'sampleMetadata', and 'variableMetadata' patterns (e.g. if you use 'profile', 'observation', and 'feature' instead), please indicate them here
`verboseL` | Logical: should comments be printed?

### Value

ExpressionSet instance

### Author(s)

Etienne Thevenot, etienne.thevenot@cea.fr

### Examples

    sacSet <- fromW4M(file.path(path.package("ropls"), "extdata"))

[Package ropls version 1.14.1 Index]