median_replicates {scsR} | R Documentation

## median_replicates

### Description

perform the median of the replicates (i.e. group by oligo sequence and takes the median of the score value ).

### Usage

    median_replicates(screen, seedColName = "seed7", scoreColName = "score",
                                     geneColName = "GeneID", seqColName="siRNA_seq", spAvgColName = NULL)

### Arguments

`screen` | data frame containing the results of the siRNA experiment.
`seedColName` | name of the column that contains the seed of the sequence (character vector)
`scoreColName` | name of the column that contains the score of the screen (character vector)
`geneColName` | name of the column that contains the names of the genes in the screen (character vector)
`seqColName` | name of the column that contains the names of the sequences in the screen
`spAvgColName` | name of the column that contains the names of the genes in the screen (character vector)

### Value

input data frame after having performed the median of the replicates

### Author(s)

Andrea Franceschini

### Examples

    	data(uuk_screen)
    	mr <- median_replicates(uuk_screen)

[Package scsR version 1.18.0 Index]