alignSingleCellData	alignSingleCellData
calcEffectSizes	calcEffectSizes
ComBatSCE	ComBatSCE
convertGeneIDs	convertGeneIDs
createSCE	createSCE
distinctColors	distinctColors
DownsampleCells	DownsampleCells
DownsampleDepth	DownsampleDepth
enrichRSCE	enrichRSCE
filterSCData	filterSCData
generateSimulatedData	generateSimulatedData
getBiomarker	getPCA
getClusterInputData	getClusterInputData
getPCA	getPCA
getTSNE	getPCA
gsvaPlot	gsvaSCE
gsvaSCE	gsvaSCE
iterateSimulations	iterateSimulations
MAST	MAST
MASTregression	MAST
MASTviolin	MAST
mouseBrainSubsetSCE	mouseBrainSubsetSCE
parseRsubreadLogs	parseRsubreadLogs
pcaVariances	pcaVariances
pcaVariances,SCtkExperiment-method	pcaVariances
pcaVariances<-	pcaVariances-set
pcaVariances<-,SCtkExperiment-method	pcaVariances
plotBatchVariance	plotBatchVariance
plotBiomarker	getPCA
plotDiffEx	plotDiffEx
plotPCA	getPCA
plotTSNE	getPCA
saveBiomarkerRes	saveBiomarkerRes
saveDiffExResults	saveDiffExResults
scDiffEx	scDiffEx
scDiffExANOVA	scDiffEx
scDiffExDESeq2	scDiffEx
scDiffExlimma	scDiffEx
SCtkExperiment	SCtkExperiment
SCtkExperiment-class	SCtkExperiment-class
singleCellTK	singleCellTK
subDiffEx	subDiffEx
subDiffExANOVA	subDiffEx
subDiffExttest	subDiffEx
summarizeTable	summarizeTable
thresholdGenes	MAST
visPlot	visPlot
