calcEffectSizes {singleCellTK} | R Documentation

## Finds the effect sizes for all genes in the original dataset, regardless of significance.

### Description

Finds the effect sizes for all genes in the original dataset, regardless of significance.

### Usage

    calcEffectSizes(countMatrix, condition)

### Arguments

`countMatrix` | Matrix. A simulated counts matrix, sans labels.
`condition` | Factor. The condition labels for the simulated cells. If more than 2 conditions are given, the first will be compared to all others by default.

### Value

A vector of cohen's d effect sizes for each gene.

### Examples

    data("mouseBrainSubsetSCE")
    res <- calcEffectSizes(assay(mouseBrainSubsetSCE, "counts"),
                           condition = colData(mouseBrainSubsetSCE)[, "level1class"])

[Package singleCellTK version 1.2.3 Index]