Rcpp_SlalomModel {slalom} | R Documentation

## The "Slalom Model" (Rcpp_SlalomModel) class

### Description

S4 class and the main class used by slalom to hold model data and results. SingleCellExperiment extends the Bioconductor SummarizedExperiment class.

### Details

This class is initialized from a matrix of expression values and a collection of genesets in a `GeneSetCollection` object from the GSEABase package.

Methods that operate on SingleCellExperiment objects constitute the basic scater workflow.

### Methods

`train()`

  void train() docstring : Train the SlalomModel

`update()`

  void update() docstring : Update the SlalomModel

`updateAlpha(...)`

  void updateAlpha(int) docstring : Update alpha

`updateEpsilon()`

  void updateEpsilon() docstring : Update Epsilon

`updatePi(...)`

  void updatePi(int) docstring : Update Pi

`updateW(...)`

  void updateW(int) docstring : Update W

`updateX(...)`

  void updateX(int) docstring : Update X

### Slots

`.xData`:

  Environment enabling access to the C++-level SlalomModel object.

[Package slalom version 1.4.1 Index]