plot3d-SlingshotDataSet {slingshot} | R Documentation

## Plot Slingshot output in 3D

### Description

Tools for visualizing lineages inferred by `slingshot`.

### Usage

    ## S3 method for class 'SlingshotDataSet'
    plot3d(x, type = NULL, add = FALSE,
      dims = seq_len(3), aspect = "iso", ...)

### Arguments

`x` | a `SlingshotDataSet` with results to be plotted.
`type` | character, the type of output to be plotted, can be one of `"lineages"`, `curves`, or `both` (by partial matching), see Details for more.
`add` | logical, indicates whether the output should be added to an existing plot.
`dims` | numeric, which dimensions to plot (default is `1:3`).
`aspect` | either a logical indicating whether to adjust the aspect ratio or a new ratio, see `plot3d`.
`...` | additional parameters to be passed to `lines3d`.

### Details

If `type == 'lineages'`, straight line connectors between cluster centers will be plotted. If `type == 'curves'`, simultaneous princiapl curves will be plotted.

When `type` is not specified, the function will first check the `curves` slot and plot the curves, if present. Otherwise, `lineages` will be plotted, if present.

### Value

returns `NULL`.

### Examples

    ## Not run:
    library(rgl)
    data("slingshotExample")
    rd <- cbind(rd, rnorm(nrow(rd)))
    sds <- slingshot(rd, cl, start.clus = "1")
    plot3d(sds, type = 'b')

    # add to existing plot
    plot3d(rd, col = 'grey50', aspect = 'iso')
    plot3d(sds, lwd = 3, add = TRUE)

    ## End(Not run)

[Package slingshot version 1.0.0 Index]