SimpleParams {splatter} | R Documentation

## The SimpleParams class

### Description

S4 class that holds parameters for the simple simulation.

### Parameters

The simple simulation uses the following parameters:

`nGenes`

  The number of genes to simulate.

`nCells`

  The number of cells to simulate.

`[seed]`

  Seed to use for generating random numbers.

`mean.shape`

  The shape parameter for the mean gamma distribution.

`mean.rate`

  The rate parameter for the mean gamma distribution.

`[count.disp]`

  The dispersion parameter for the counts negative binomial distribution.

The parameters not shown in brackets can be estimated from real data using `simpleEstimate`. For details of the simple simulation see `simpleSimulate`.

[Package splatter version 1.6.1 Index]