readWholeGenomeAnnotation {srnadiff} | R Documentation

## Segmentation using an annotation file that contains every genomic feature; it extracts the miRNAs.

### Description

Segmentation using an annotation file that contains every genomic feature; it extracts the miRNAs.

### Usage

    readWholeGenomeAnnotation(fileName)

### Arguments

`fileName` | The annotation file name in GFF/GTF format.

### Value

A GRanges.

### Examples

    dir        <- system.file("extdata", package="srnadiff", mustWork = TRUE)
    gtfFile    <- file.path(dir, "Homo_sapiens.GRCh38.76.gtf.gz")
    annotation <- readWholeGenomeAnnotation(gtfFile)

[Package srnadiff version 1.2.1 Index]