c30b4f6fa5970cc97d1cd5bdc3811c32 *DESCRIPTION
01cdf06037faf081cf3c8dc0dcaa0434 *INDEX
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77a30dbd9a48297ae6e6ef2194a95267 *Meta/features.rds
1403ffcbe52ced6e2a9ec2126c1088c8 *Meta/hsearch.rds
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3e0433db2d2b0112028d2b29bd6fa7e9 *Meta/package.rds
e2eff5cf47808941a426c13869e9c7ba *Meta/vignette.rds
17057a7c06157d40268f8f47b37e8fc9 *NAMESPACE
a2d4c1aeaf350223915bd6d74070463f *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/srnadiff
9943353c3a709610377485dcd7cea103 *R/srnadiff.rdb
93016d36fb4c05450c5532f3d60ea5a6 *R/srnadiff.rdx
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da4c07c1f8d4bd204537290833e4d354 *doc/srnadiff.Rmd
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8b37b7c3d280af4e6996c62545e76ebb *extdata/SRR1634756.bam
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4680d7b9427067f7983ccf91c953cba6 *extdata/SRR1634758.bam
cf7d16822f93d7271cebb9c79afef019 *extdata/SRR1634759.bam
509af9418f5bd8117137b35bf28d5533 *extdata/SRR1634760.bam
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8e0a594fd6d385d8f68273bc5ee6a46d *extdata/header.sam
16513bd8fcc6eae52529d16288faa6db *extdata/mirbase21_GRCh38.gff3
b040946ccb68ce4ca68c3fb70b54c0ee *help/AnIndex
33f5a7850707de424faf9b748e5fb903 *help/aliases.rds
f7288fb75f3db0f1f3bd23a442c7a84f *help/paths.rds
8e9b387e5b776bcc4497a6e7d0825214 *help/srnadiff.rdb
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e014c31a524318fc8c890cc14c79a1be *html/computePvalues.html
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b8ec1cc3c12770d0517ae047174f9552 *html/rcpp_naive.html
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c07f17b742f83bf1aa1f1d5a183bda3d *html/rcpp_slice.html
b68b9fb7d201ece38e3dff8cf8c19d45 *html/rcpp_viterbi.html
078dc7ee49fb2c33e3e4d03126bacda5 *html/readAnnotation.html
a6f563f6c7cb207682820557dc10ed86 *html/readMiRBaseMatureAnnotation.html
19c1656263de497128f7e63e0b3920bb *html/readMiRBasePreAnnotation.html
900b652e5edf6f2692af62d414762bcf *html/readWholeGenomeAnnotation.html
19202b34fe6ffa6f045bc0f034e1666d *html/regions-method.html
fbde352ecd1aff54c1f36b4442e3172b *html/runAll.html
0a4bd4a24d85777ccfd6de6224886fab *html/runAllAnnotation.html
833c6f9ba9e83a665c2f860b55176a16 *html/runAllHmm.html
ef3859a118e8de7fe3171d3984786f6a *html/runAllNaive.html
2cc5ad84255e793380aff47e7ffc5254 *html/runAllSlice.html
7ac6790ef20060b342b663c4f21bf3a2 *html/runHmm.html
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1f923af6a3d7b82ce9c3c53d5310ef4d *html/sRNADiff-class.html
ed1e466a8638e007efb78c3d3f428215 *html/sRNADiffExample.html
213c76cbd9994845552949b04514d536 *html/sRNADiffExp.html
044ff0548800d23c1fe408b3a5e0b10b *html/setEmissionProbabilities-method.html
9aab3fcbf44b4a2353809dcbeaf543bc *html/setEmissionThreshold-method.html
201339ee16479b4b0d4a6d3d07c0c9ae *html/setMergeDistance-method.html
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4b951c8988434eacb5feb01dc414b837 *html/setMinDifferences-method.html
dd721cd26a600478b990bf74dce182c5 *html/setMinOverlap-method.html
098aa77553f3a2d921cd89b081543986 *html/setNThreads-method.html
8dcb9cd0fb96328b8e10576b1c2ae3a6 *html/setSizes-method.html
3a6a7c8f8b5baf2d82437c4fd5495ce2 *html/setStrategies-method.html
ea51eb82fb734eb2f7a255f9b9b7904f *html/setTransitionProbabilities-method.html
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23e4058ebf864d2029e73e81a37d8ab1 *html/srnadiff.html
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