Package: tofsims
Type: Package
Title: Import, process and analysis of Time-of-Flight Secondary Ion
        Mass Spectrometry (ToF-SIMS) imaging data
Version: 1.10.1
Author: Lorenz Gerber, Viet Mai Hoang
Maintainer: Lorenz Gerber <genfys@gmail.com>
Depends: R (>= 3.3.0), methods, utils, ProtGenerics
Description: This packages offers a pipeline for import, processing and analysis of ToF-SIMS
          2D image data. Import of Iontof and Ulvac-Phi raw or preprocessed data is
          supported. For rawdata, mass calibration, peak picking and peak integration exist.
          General funcionality includes data binning, scaling, image subsetting and
          visualization. A range of multivariate tools common in the ToF-SIMS community are
          implemented (PCA, MCR, MAF, MNF). An interface to the bioconductor image processing
          package EBImage offers image segmentation functionality.
License: GPL-3
Imports: Rcpp (>= 0.11.2), ALS, ChemometricsWithR, signal, KernSmooth,
        graphics, grDevices, stats
Suggests: EBImage, knitr, rmarkdown, testthat, tofsimsData,
        BiocParallel, RColorBrewer
Enhances: parallel
LinkingTo: Rcpp, RcppArmadillo
VignetteBuilder: knitr
biocViews: ImmunoOncology, Infrastructure, DataImport,
        MassSpectrometry, ImagingMassSpectrometry, Proteomics,
        Metabolomics
RoxygenNote: 5.0.1
NeedsCompilation: yes
URL: https://github.com/lorenzgerber/tofsims
BugReports: https://github.com/lorenzgerber/tofsims/issues
git_url: https://git.bioconductor.org/packages/tofsims
git_branch: RELEASE_3_8
git_last_commit: 59e42aa
git_last_commit_date: 2019-01-04
Date/Publication: 2019-01-04
Packaged: 2019-01-05 03:45:56 UTC; biocbuild
Built: R 3.5.2; i386-w64-mingw32; 2019-01-05 12:47:52 UTC; windows
Archs: i386, x64
