createMatrixMotif {transite} | R Documentation

## Creates Transite motif object from position weight matrix

### Description

Takes a position weight matrix (PWM) and meta info and returns an object of class `RBPMotif`.

### Usage

    createMatrixMotif(id, rbps, matrix, type, species, src)

### Arguments

`id` | motif id (character vector of length 1)
`rbps` | character vector of names of RNA-binding proteins associated with this motif
`matrix` | data frame with four columns (A, C, G, U) and 6 - 15 rows (positions), where cell (i, j) contains weight of nucleotide j on position i
`type` | type of motif (e.g., `'HITS-CLIP'`, `'EMSA'`, `'SELEX'`, etc.)
`species` | species where motif was discovered (e.g., `'Homo sapiens'`)
`src` | source of motif (e.g., `'RBPDB v1.3.1'`)

### Value

object of class `RBPMotif`

### Examples

    custom.motif <- createMatrixMotif(
      "custom.motif", "RBP1",
      transite:::toy.motif.matrix, "HITS-CLIP",
      "Homo sapiens", "user"
    )

[Package transite version 1.0.2 Index]