read.hyphy.seq {treeio} | R Documentation

## read.hyphy.seq

### Description

parse sequences from hyphy output

### Usage

    read.hyphy.seq(file)

### Arguments

`file` | output of hyphy ancestral sequence inference; nexus format

### Value

DNAbin object

### Author(s)

guangchuang yu

### Examples

    ancseq <- system.file("extdata/HYPHY", "ancseq.nex", package="treeio")
    read.hyphy.seq(ancseq)

[Package treeio version 1.6.2 Index]