read_uniprobe {universalmotif} | R Documentation

## Import UNIPROBE motifs.

### Description

Import UNIPROBE formatted motifs. Assumed DNA.

### Usage

    read_uniprobe(file, skip = 0)

### Arguments

`file` | `character(1)` File name.
`skip` | `numeric(1)` If not zero, will skip however many desired lines in the file before starting to read.

### Value

`list` universalmotif objects.

### Author(s)

Benjamin Jean-Marie Tremblay, b2tremblay@uwaterloo.ca

### References

Hume M, Barrera L, Gisselbrecht S, Bulyk M (2015). “UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions.” Nucleic Acids Research, 43, D117-D122.

### See Also

Other read_motifs: `read_cisbp`, `read_homer`, `read_jaspar`, `read_matrix`, `read_meme`, `read_motifs`, `read_transfac`

### Examples

    uniprobe.minimal <- read_uniprobe(system.file("extdata", "uniprobe_minimal.txt",
                                                  package = "universalmotif"))
    uniprobe.full <- read_uniprobe(system.file("extdata", "uniprobe_full.txt",
                                               package = "universalmotif"))

[Package universalmotif version 1.0.22 Index]