Package: zFPKM
Title: A suite of functions to facilitate zFPKM transformations
Version: 1.4.1
Authors@R: c( person("Ron", "Ammar", role = c("aut", "cre"), email =
        "ron.ammar@bms.com"), person("John", "Thompson", role = "aut",
        email = "john.thompson@bms.com") )
Description: Perform the zFPKM transform on RNA-seq FPKM data. This
        algorithm is based on the publication by Hart et al., 2013
        (Pubmed ID 24215113). Reference recommends using zFPKM > -3 to
        select expressed genes. Validated with encode open/closed
        chromosome data. Works well for gene level data using FPKM or
        TPM. Does not appear to calibrate well for transcript level
        data.
License: GPL-3 | file LICENSE
URL: https://github.com/ronammar/zFPKM/
BugReports: https://github.com/ronammar/zFPKM/issues
Imports: checkmate, dplyr, ggplot2, tidyr, SummarizedExperiment
Suggests: knitr, limma, edgeR, GEOquery, stringr, printr
VignetteBuilder: knitr
biocViews: ImmunoOncology, RNASeq, FeatureExtraction, Software,
        GeneExpression
Depends: R (>= 3.4.0)
LazyData: true
RoxygenNote: 6.0.1
git_url: https://git.bioconductor.org/packages/zFPKM
git_branch: RELEASE_3_8
git_last_commit: e1c2a03
git_last_commit_date: 2019-01-04
Date/Publication: 2019-01-04
NeedsCompilation: no
Packaged: 2019-01-05 04:38:02 UTC; biocbuild
Author: Ron Ammar [aut, cre],
  John Thompson [aut]
Maintainer: Ron Ammar <ron.ammar@bms.com>
Built: R 3.5.2; ; 2019-01-05 12:50:17 UTC; windows
