# Decomposing Heterogeneous Cohorts using Omic Data Profiling

## Documentation for package ‘deco’ version 1.0.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

deco-package | DECO: DEcomposing heterogeneous Cohorts from Omic profiling.
ALCLdata | Subset of microarray gene expression data from Anaplastic Large Cell Leukemia disease.
AnnotateDECO | DECO annotating function
deco | DECO: DEcomposing heterogeneous Cohorts from Omic profiling.
deco-class | Class '"deco"'
decoNSCA | Non-Symmetrical Correspondence Analysis (NSCA) applied to a subsampled dataset
decoRDA | Subsampling function to find out differential events along samples from an omic dataset
decoReport | Report of DECO analyisis
featureTable | Accessor to 'featureTable' slot of 'deco-class' objects.
featureTable-method | Class '"deco"'
NSCAcluster | Accessor to 'NSCAcluster' slot of 'deco-class' objects.
NSCAcluster-method | Class '"deco"'
plotAssociationH | Plot to visualize association among DECO subclasses and sample information (phenotype).
plotDECOProfile | Feature profile from DECO analysis
plotGainingH | Gaining plots for using h-statistic instead original omic data.
plotHeatmapH | Heatmap corresponding to h-statistic matrix provided by DECO analysis.
show-method | Class '"deco"'
summary-method | Class '"deco"'