Package: BloodCancerMultiOmics2017
Type: Package
Title: "Drug-perturbation-based stratification of blood cancer" by
        Dietrich S, Oles M, Lu J et al. - experimental data and
        complete analysis
Version: 1.4.0
Author: Malgorzata Oles, Sascha Dietrich, Junyan Lu, Britta Velten, Andreas Mock, Vladislav Kim, Wolfgang Huber
Maintainer: Malgorzata Oles <malgorzata.oles@embl.de>
Description: The package contains data of the Primary Blood Cancer Encyclopedia (PACE) project together with a complete executable transcript of the statistical analysis and reproduces figures presented in the paper "Drug-perturbation-based stratification of blood cancer" by Dietrich S, Oles M, Lu J et al., J. Clin. Invest. (2018) 128(1):427-445. doi:10.1172/JCI93801.
License: LGPL (>= 3)
Encoding: UTF-8
VignetteBuilder: knitr
Depends: R (>= 3.5.0)
Imports: beeswarm, Biobase, DESeq2, devtools, dplyr, ggdendro, ggplot2,
        glmnet, graphics, grDevices, grid, gtable, ipflasso, methods,
        RColorBrewer, reshape2, scales, stats, SummarizedExperiment,
        survival, tibble
Suggests: BiocStyle, knitr, rmarkdown, abind, AnnotationDbi, biomaRt,
        broom, colorspace, cowplot, dendsort, doParallel, foreach,
        forestplot, genefilter, ggbeeswarm, ggtern, gridExtra, hexbin,
        IHW, limma, magrittr, Matrix, maxstat, nat, org.Hs.eg.db,
        pheatmap, piano, readxl, Rtsne, tidyr, tidyverse, xtable
biocViews: ExperimentData, ReproducibleResearch, CancerData,
        LeukemiaCancerData
LazyData: true
git_url:
        https://git.bioconductor.org/packages/BloodCancerMultiOmics2017
git_branch: RELEASE_3_9
git_last_commit: c793cbb
git_last_commit_date: 2019-05-02
Date/Publication: 2019-05-07
NeedsCompilation: no
Packaged: 2019-05-07 17:01:13 UTC; biocbuild
