Changes in version 1.19.3
-------------------------
- Use BiocManager
- Fix typo in rmd

Changes in version 1.19.0
-------------------------
- New Bioconductor devel version

Changes in version 1.18.0
-------------------------
- New Bioconductor release version

Changes in version 1.17.1
-------------------------
- Fix/update vignettes <2018-01-12 Fri>
- Add mention of DEP package <2018-01-13 Sat>

Changes in version 1.17.0
-------------------------
- New Bioc devel version

Changes in version 1.16.0
-------------------------
- New Bioc release version

Changes in version 1.15.2
-------------------------
- Bump to sync with Bioc <2017-10-19 Thu>

Changes in version 1.15.1
-------------------------
- mstut functions <2017-06-27 Tue>
- Move vignettes to Rmd/html <2017-06-27 Tue>
- New vignette about proteomics package downloads <2017-06-29 Thu>

Changes in version 1.15.0
-------------------------
- New devel version

Changes in version 1.13.1
-------------------------

- Fix failing vignette <2017-04-18 Tue>
- Update static vignette <2017-04-18 Tue>

Changes in version 1.13.0
-------------------------

- New devel version
 
Changes in version 1.11.4
-------------------------

- Suggest genefilter <2016-10-15 Sat>
 
Changes in version 1.11.3
-------------------------

- Update/compile static vignette for new release <2016-10-07 Fri>
- Fix typo <2016-03-01 Tue>
 
Changes in version 1.9.3
------------------------

- updated msDataTab
 
Changes in version 1.9.2
------------------------

- more edits to vignette <2015-12-01 Tue>
- added Vlas's comprehensive real-life example to the vignette
   <2015-12-05 Sat>
- update msDataTab  <2015-12-05 Sat>
 
Changes in version 1.9.1
------------------------

- updated RforProteomics vignette <2015-11-30 Mon>
- (unexported) msDataTable function to create a MS/prot data/objects
   table <2015-11-30 Mon>
- add a short section for readMSnSet[2] <2015-12-01 Tue>

Changes in version 1.7.2
------------------------

- Fix vignette for mzTab v0.9 <2015-09-30 Wed>

Changes in version 1.7.1
------------------------

- Added ReproducibleResearch biocView <2015-06-08 Mon>
- Update to MALDIquant 1.12 <2015-06-12 Fri>

Changes in version 1.7.0
------------------------

- Bioc 3.2 devel

Changes in version 1.6.0
------------------------

- Bioc 3.1 release

Changes in version 1.5.9
------------------------

- recompile r4p vignette and add ref to vis vignette [2015-03-23 Mon]
- make RProtVis static due to hangs [2015-03-24 Tue]
 
Changes in version 1.5.8
------------------------

- Vignette updates: simple R plots [2015-02-21 Sat]
 
Changes in version 1.5.7
------------------------

- suggest rmarkdown (used to render vis vignette) [2015-02-12 Thu]
 
Changes in version 1.5.6
------------------------

- don't require GNU make [2015-02-11 Wed]
 
Changes in version 1.5.5
------------------------

- more vis vig updates [2015-01-28 Wed]
- added MS animations [2015-01-29 Thu]
- document workflows [2015-01-30 Fri]
 
Changes in version 1.5.4
------------------------

- rename ProtViz() to RProtVis/RProtViz to avoid confusion with the
   vignette name [2015-01-28 Wed]
- RProtVis vignette updates [2015-01-27 Tue]
- Use markdown::render [2015-01-27 Tue]

Changes in version 1.5.3
------------------------

- Bioc release version bump

Changes in version 1.5.2
------------------------

- cache package info [2014-11-15 Sat]
 
Changes in version 1.5.1
------------------------

- update vignette and fixing errors [2014-10-31 Fri]

Changes in version 1.5.0
------------------------

- new devel version for Bioc 3.1

Changes in version 1.4.0
------------------------

- new release version for Bioc 3.0
 
Changes in version 1.3.8
------------------------

- remove github link to MSGFgui since it has now been accepted
   [2014-10-03 Fri]
- new MSnID section [2014-10-04 Sat]

Changes in version 1.3.7
------------------------

- mzR ident section [2014-10-01 Wed]
- HUPO2014 poster [2014-10-02 Thu]

Changes in version 1.3.6
------------------------

- new MSGF+/gui sections contributed by Thomas [2014-10-01 Wed]

Changes in version 1.3.5
------------------------

- Proteomics workflow (from Bioc2014 workshop) [2014-08-17 Sun]
- Mention viz vig requires Bioc >= 3.0 and link to on-line version
   [2014-08-27 Wed]
- Link to shiyapps/shinyMA [2014-09-03 Wed]
- added QC section [2014-10-01 Wed]

Changes in version 1.3.4
------------------------

- Using BiocStyle [2014-08-16 Sat]

Changes in version 1.3.3
------------------------

- Many more sections to RProtVis vignette [2014-08-13 Wed]

Changes in version 1.3.2
------------------------

- RforProteomics wiki on github [2014-08-02 Sat]
- Proteomics viz vignette [2014-08-06 Wed]
- shinyMA function [2014-08-07 Thu]
- fix PXD000001 PRIDE urls [2014-08-08 Fri]
- add protViz CRAN package to vig [2014-08-09 Sat]
- RProtVis vignette needs MALDIquant >= 1.11 now [2014-08-11 Mon]

Changes in version 1.3.1
------------------------

- get biocView packages as a function [2014-07-23 Wed]
- various typos and updates in vignette [2014-07-23 Wed]
- functions to get packages for a biocView [2014-07-23 Wed]
- relying on cache to reduce build time [2014-07-24 Thu]

Changes in version 1.0.18
-------------------------

- pxr renamed rpx [2014-03-28]

Changes in version 1.0.17
-------------------------

- using pxr to download data from the PX repository [2014-03-24 Mon]

Changes in version 1.0.16
-------------------------

- new downloadData and getThermoHelaPRTC functions [2013-12-14 Sat]

Changes in version 1.0.13
-------------------------

- Updates in the MALDIquant section <2013-09-08 Sun>
- Fixed new warnings in vignette: cols - columns <2013-09-18 Wed>
- do not cache package listing code <2013-09-19 Thu>

Changes in version 1.0.12
-------------------------

- Moving cleaver to enhances to all building on Bioc release <2013-07-19 Fri>

Changes in version 1.0.11
-------------------------

- Adding twitter account to README <2013-07-12 Fri>

Changes in version 1.0.10
-------------------------

- clarify reamde <2013-07-08 Mon> 
- added Bioc2013 poster as static vignette <2013-07-12 Fri>

Changes in version 1.0.9
------------------------

- devel use clarification in readme <2013-07-08 Mon>
- cite arXiv in vigette <2013-07-08 Mon>
- cite R4P mailing list in vignette <2013-07-08 Mon>

Changes in version 1.0.8
------------------------

- rbioc-sig-proteomics group references in readme <2013-07-03 Wed>
- added a twitter hook to the github repo <2013-07-03 Wed>
- Sebastian is now contributor <2013-07-05 Fri>
- Sebastian added new cleaver section in vignette <2013-07-05 Fri>
- document useDevel in README.md <2013-07-05 Fri>

Changes in version 1.0.7
------------------------

- updated README.md and added TM repo to vignette <2013-07-02 Tue>

Changes in version 1.0.6
------------------------

- Updated bib file and added CITATION <2013-06-07 Fri>

Changes in version 1.0.5
------------------------

- MALDIquant: remove misleading length calls by 
   Sebastian Gibb <2013-05-24 Fri>

Changes in version 1.0.4
------------------------

- importBrukerFlex: set verbose=FALSE, contributed 
   by Sebastian Gibb <2013-05-01 Wed>

Changes in version 1.0.3
------------------------

- Updates in the MALDIquant section, contributed 
   by Sebastian Gibb <2013-04-26 Fri>

Changes in version 1.0.2
------------------------

- update in vignette NetCDF installation <2013-04-19 Fri>
- more similar updates <2013-04-24 Wed>

Changes in version 1.0.1
------------------------

- fixed 'doc/vigsrc/' to 'doc/vigsrc' in vignette <2013-04-09 Tue> 
- typos and installation section in vignette <2013-04-09 Tue>

Changes in version 1.0.0
------------------------

- bumping version for stable release <2013-04-06 Sat>
- Adding rTANDEM as Suggests <2013-04-06 Sat>
- Update and rebuild vignette with R 3.0.0 stable <2013-04-06 Sat>


Changes in version 0.99.3
-------------------------

- Bioc version bump

Changes in version 0.99.2
-------------------------

- removing rTANDEM from Suggests, as the package 
   currently fails to build and results in R4P 
   checking errors. Will add it again when 
   builds <2013-02-20 Wed>

Changes in version 0.99.1
-------------------------

- adding pre-build vignette <2013-02-20 Wed>

Changes in version 0.99.0
-------------------------

- typo in startup msg <2013-01-09 Wed>
- update README.md with R-2.15.2 installation 
   instructions <2013-01-09 Wed>
- Major updates to vignette <2013-02-15 Fri>
- Added rTANDEM <2013-02-15 Fri>

Changes in version 0.2.2
------------------------

- removed Makefile from .Rbuildignore <2012-10-22 Mon>
- Using mzXML from ProteomeXchange repo <2012-10-23 Tue>
- using parallel quant <2012-10-23 Tue>

Changes in version 0.2.1
------------------------

- added visible library("MSnbase") in vignette <2012-10-17 Wed>

Changes in version 0.2.0
------------------------

- Added NEWS file <2012-10-05 Fri>
